References

Efron, Bradley, and Robert Tibshirani. 2002. “Empirical Bayes Methods and False Discovery Rates for Microarrays.” Genetic Epidemiology 23 (1): 70–86.

Gohil, Satyen H, J Bryan Iorgulescu, David A Braun, Derin B Keskin, and Kenneth J Livak. 2021. “Applying High-Dimensional Single-Cell Technologies to the Analysis of Cancer Immunotherapy.” Nature Reviews Clinical Oncology 18 (4): 244–56.

Golub, Todd R, Donna K Slonim, Pablo Tamayo, Christine Huard, Michelle Gaasenbeek, Jill P Mesirov, Hilary Coller, et al. 1999. “Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring.” Science 286 (5439): 531–37.

Hansson, Oskar, Kaj Blennow, Henrik Zetterberg, and Jeffrey Dage. 2023. “Blood Biomarkers for Alzheimer’s Disease in Clinical Practice and Trials.” Nature Aging 3 (5): 506–19.

Ito, Shinsuke, Nando Dulal Das, Takashi Umehara, and Haruhiko Koseki. 2022. “Factors and Mechanisms That Influence Chromatin-Mediated Enhancer–Promoter Interactions and Transcriptional Regulation.” Cancers 14 (21): 5404.

Kepchia, Devin, Ling Huang, Richard Dargusch, Robert A Rissman, Maxim N Shokhirev, Wolfgang Fischer, and David Schubert. 2020. “Diverse Proteins Aggregate in Mild Cognitive Impairment and Alzheimer’s Disease Brain.” Alzheimer’s Research & Therapy 12: 1–20.

Lei, Yalan, Rong Tang, Jin Xu, Wei Wang, Bo Zhang, Jiang Liu, Xianjun Yu, and Si Shi. 2021. “Applications of Single-Cell Sequencing in Cancer Research: Progress and Perspectives.” Journal of Hematology & Oncology 14 (1): 91.

Schaff, Dylan L, Aria J Fasse, Phoebe E White, Robert J Vander Velde, and Sydney M Shaffer. 2024. “Clonal Differences Underlie Variable Responses to Sequential and Prolonged Treatment.” Cell Systems 15 (3): 213–26.

Shalek, Alex K, and Mikael Benson. 2017. “Single-Cell Analyses to Tailor Treatments.” Science Translational Medicine 9 (408): eaan4730.

Silva, Paulo FL da, and Björn Schumacher. 2021. “Principles of the Molecular and Cellular Mechanisms of Aging.” Journal of Investigative Dermatology 141 (4): 951–60.

Teichmann, Sarah, and Mirjana Efremova. 2020. “Method of the Year 2019: Single-Cell Multimodal Omics.” Nature Methods 17 (1): 2020.

Tibshirani, Robert, Michael Saunders, Saharon Rosset, Ji Zhu, and Keith Knight. 2005. “Sparsity and Smoothness via the Fused Lasso.” Journal of the Royal Statistical Society Series B: Statistical Methodology 67 (1): 91–108.

Verschoor, Chris P, Alina Lelic, Jonathan L Bramson, and Dawn ME Bowdish. 2015. “An Introduction to Automated Flow Cytometry Gating Tools and Their Implementation.” Frontiers in Immunology 6: 380.

Von Bernhardi, Rommy, Laura Eugenı́n-von Bernhardi, and Jaime Eugenı́n. 2015. “Microglial Cell Dysregulation in Brain Aging and Neurodegeneration.” Frontiers in Aging Neuroscience 7: 124.

Wen, Lu, Guoqiang Li, Tao Huang, Wei Geng, Hao Pei, Jialiang Yang, Miao Zhu, et al. 2022. “Single-Cell Technologies: From Research to Application.” The Innovation 3 (6).

Zhou, Yi, Hongjun Song, and Guo-li Ming. 2024. “Genetics of Human Brain Development.” Nature Reviews Genetics 25 (1): 26–45.